PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G271700.1
Common NameB456_001G271700, LOC105769687
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 248aa    MW: 28331.3 Da    PI: 9.5377
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G271700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003295117223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +C+ C+++++++ +L  H +  H
  Gorai.001G271700.1  95 SCSVCSRVYPTSRLLSIHVSEaH 117
                         6*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003555.26792IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806992IPR007087Zinc finger, C2H2
SMARTSM003555.494117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096117IPR007087Zinc finger, C2H2
SMARTSM003550.092132157IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134157IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAMVVDYKHD SSFPYWTSVR RRFAPDSPFF SSGNIERELL AKQVALDFTE DERNQLEKMI  60
DTDARGVFCP IVGCGARLTL LEDFEDHYNT RHTASCSVCS RVYPTSRLLS IHVSEAHDSF  120
FQAKVARGYA MYECLVEGCD LKFKNYKGRQ QHLVDKHKFP TSFEFFKKAH PSKKQRLKNQ  180
RKRAVNKKDE EVPSKMEVEN EMMEGLVSAV SKLSTSDSSP STVSFGRRNA RGLTFVPRSI  240
QPPLQKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172182KKQRLKNQRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445934.10.0PREDICTED: zinc finger protein 511
TrEMBLA0A0D2M3U40.0A0A0D2M3U4_G
STRINGVIT_14s0068g01930.t011e-134(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99712632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-111zinc ion binding;nucleic acid binding;zinc ion binding
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]